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pathway-commons-mcp

io.github.mrfentmen/pathway-commons-mcp v1.0.1
Official Registry search git
Repository

Pathway Commons graph search: find pathways, proteins and complexes by name

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Install connect locally via stdio

Run in your terminal 
claude mcp add pathway-commons-mcp -- npx -y @mrfentmen/pathway-commons-mcp
Add to claude_desktop_config.json 
{
  "mcpServers": {
    "pathway-commons-mcp": {
      "command": "npx",
      "args": [
        "-y",
        "@mrfentmen/pathway-commons-mcp"
      ]
    }
  }
}
Add to ~/.cursor/mcp.json 
{
  "mcpServers": {
    "pathway-commons-mcp": {
      "command": "npx",
      "args": [
        "-y",
        "@mrfentmen/pathway-commons-mcp"
      ]
    }
  }
}
Add to Cursor →
Add to ~/.codeium/windsurf/mcp_config.json 
{
  "mcpServers": {
    "pathway-commons-mcp": {
      "command": "npx",
      "args": [
        "-y",
        "@mrfentmen/pathway-commons-mcp"
      ]
    }
  }
}
Add to .vscode/mcp.json 
{
  "servers": {
    "pathway-commons-mcp": {
      "type": "stdio",
      "command": "npx",
      "args": [
        "-y",
        "@mrfentmen/pathway-commons-mcp"
      ]
    }
  }
}
Add to VS Code →
Add to cline_mcp_settings.json 
{
  "mcpServers": {
    "pathway-commons-mcp": {
      "command": "npx",
      "args": [
        "-y",
        "@mrfentmen/pathway-commons-mcp"
      ]
    }
  }
}

Packages

npm @mrfentmen/pathway-commons-mcp@1.0.1

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